PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.005G106366.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 473aa    MW: 55796.9 Da    PI: 9.9041
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.005G106366.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.51e-1336125190
                  FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                           +fYn Y+ evGF v+ ++s+     + +++   ++++  +e   +++    +++r t+ ++r+gC ak+++ +++d  w+++  ++eHn
  Sobic.005G106366.1.p  36 EFYNMYSWEVGFGVKFNSSRPGpksSAKNTENAEQYRSMQEIVCQKSG---NDSRITTGTKRCGCPAKIRLLRTDDYGWYISLHVKEHN 121
                           6***************99986632233333344445444444444444...45888999****************************** PP

                  FAR1  87 Hela 90 
                           Hel+
  Sobic.005G106366.1.p 122 HELS 125
                           **97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1036125IPR004330FAR1 DNA binding domain
PfamPF105513.3E-29247340IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MGTIERAMRS APTRKTEHIF EPEVGLVFDS REEAREFYNM YSWEVGFGVK FNSSRPGPKS  60
SAKNTENAEQ YRSMQEIVCQ KSGNDSRITT GTKRCGCPAK IRLLRTDDYG WYISLHVKEH  120
NHELSRTNGE KREWNSHRQI DPSMKEMIRN LRLNNVSLTR VHCIMGDVYG TSADVPWTKK  180
SLRTICSQIT RDQMGDDIKK TMDIFREMHE ADPGFRFSVE LDKHSRIRTL LWCSGRGREQ  240
YACFGDVVTF DTTYCTNIYK MPFGLFVGVN HHFQTTIFAG VLMRRETARS FKWVFKEFLN  300
LMGGKAPFTI LTDQCKAMAK AIRFVMPSTY HLWCKWHVMK RIRECLGPLY TKNKKFRDDF  360
WLVVNGMLTE DEFERAWDDL VTRYNLQKNS FMNRIYKSKK KWAKPWSKDK FCARMSSTQR  420
SESANFMLKR YVPRNSSMNH FVSQYNRMLY EREREEDIAE DKTKQFDVIL RN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449411.10.0hypothetical protein SORBIDRAFT_05g009983, partial
TrEMBLC5Y2070.0C5Y207_SORBI; Putative uncharacterized protein Sb05g009983 (Fragment)
STRINGSb05g009983.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-65FAR1-related sequence 5